Cluster: HRGMv2_0025_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0025
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0025_10 | HRGMv2_0025_10_47 | 45362 | 46219 | + | CE4 |
| pfam | HRGMv2_0025_10 | HRGMv2_0025_10_48 | 46219 | 47052 | + | Polysacc_deac_1 |
| STP | HRGMv2_0025_10 | HRGMv2_0025_10_49 | 47073 | 47894 | + | SBP_bac_3 |
| TC | HRGMv2_0025_10 | HRGMv2_0025_10_50 | 47907 | 48563 | + | 3.A.1.3.15 |
| TC | HRGMv2_0025_10 | HRGMv2_0025_10_51 | 48556 | 49263 | + | 3.A.1.3.15 |
Gene ID: HRGMv2_0025_10_47
Type: CAZyme
Location: 45362 - 46219 (+)
Type: CAZyme
Location: 45362 - 46219 (+)
Gene ID: HRGMv2_0025_10_48
Type: pfam
Location: 46219 - 47052 (+)
Type: pfam
Location: 46219 - 47052 (+)
Gene ID: HRGMv2_0025_10_49
Type: STP
Location: 47073 - 47894 (+)
Type: STP
Location: 47073 - 47894 (+)
Gene ID: HRGMv2_0025_10_50
Type: TC
Location: 47907 - 48563 (+)
Type: TC
Location: 47907 - 48563 (+)
Gene ID: HRGMv2_0025_10_51
Type: TC
Location: 48556 - 49263 (+)
Type: TC
Location: 48556 - 49263 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.