Cluster: HRGMv2_0025_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0025
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0025_2 | HRGMv2_0025_2_77 | 105568 | 106590 | + | GT2 |
| pfam | HRGMv2_0025_2 | HRGMv2_0025_2_78 | 106948 | 107994 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_0025_2 | HRGMv2_0025_2_79 | 107991 | 108887 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| TC | HRGMv2_0025_2 | HRGMv2_0025_2_80 | 109349 | 109762 | + | 2.A.7.2.1 |
Gene ID: HRGMv2_0025_2_77
Type: CAZyme
Location: 105568 - 106590 (+)
Type: CAZyme
Location: 105568 - 106590 (+)
Gene ID: HRGMv2_0025_2_78
Type: pfam
Location: 106948 - 107994 (+)
Type: pfam
Location: 106948 - 107994 (+)
Gene ID: HRGMv2_0025_2_79
Type: pfam
Location: 107991 - 108887 (+)
Type: pfam
Location: 107991 - 108887 (+)
Gene ID: HRGMv2_0025_2_80
Type: TC
Location: 109349 - 109762 (+)
Type: TC
Location: 109349 - 109762 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.