Cluster: HRGMv2_0025_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0025
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0025_1 | HRGMv2_0025_1_72 | 78678 | 80237 | - | GT83 |
| pfam | HRGMv2_0025_1 | HRGMv2_0025_1_73 | 80234 | 81169 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | HRGMv2_0025_1 | HRGMv2_0025_1_74 | 81226 | 82251 | - | 4.D.2.1.4 |
| pfam | HRGMv2_0025_1 | HRGMv2_0025_1_75 | 82340 | 83197 | - | YdjC |
| pfam | HRGMv2_0025_1 | HRGMv2_0025_1_76 | 83300 | 84289 | - | RNase_HII |
| TC | HRGMv2_0025_1 | HRGMv2_0025_1_77 | 84303 | 87386 | - | 2.A.6.3.1 |
| TC | HRGMv2_0025_1 | HRGMv2_0025_1_78 | 87389 | 88507 | - | 2.A.6.2.39 |
Gene ID: HRGMv2_0025_1_72
Type: CAZyme
Location: 78678 - 80237 (-)
Type: CAZyme
Location: 78678 - 80237 (-)
Gene ID: HRGMv2_0025_1_73
Type: pfam
Location: 80234 - 81169 (-)
Type: pfam
Location: 80234 - 81169 (-)
Gene ID: HRGMv2_0025_1_74
Type: TC
Location: 81226 - 82251 (-)
Type: TC
Location: 81226 - 82251 (-)
Gene ID: HRGMv2_0025_1_75
Type: pfam
Location: 82340 - 83197 (-)
Type: pfam
Location: 82340 - 83197 (-)
Gene ID: HRGMv2_0025_1_76
Type: pfam
Location: 83300 - 84289 (-)
Type: pfam
Location: 83300 - 84289 (-)
Gene ID: HRGMv2_0025_1_77
Type: TC
Location: 84303 - 87386 (-)
Type: TC
Location: 84303 - 87386 (-)
Gene ID: HRGMv2_0025_1_78
Type: TC
Location: 87389 - 88507 (-)
Type: TC
Location: 87389 - 88507 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.