Cluster: HRGMv2_0025_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0025
- CGC Family ID: CGCFAM_09480
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0025_21 | HRGMv2_0025_21_20 | 21320 | 22090 | + | 3.A.1.103.6 |
| TC | HRGMv2_0025_21 | HRGMv2_0025_21_21 | 22099 | 22836 | + | 3.A.1.103.1 |
| pfam | HRGMv2_0025_21 | HRGMv2_0025_21_22 | 23687 | 24184 | - | Transposase_20 |
| CAZyme | HRGMv2_0025_21 | HRGMv2_0025_21_23 | 24559 | 26295 | + | GT102 | GT103 |
Gene ID: HRGMv2_0025_21_20
Type: TC
Location: 21320 - 22090 (+)
Type: TC
Location: 21320 - 22090 (+)
Gene ID: HRGMv2_0025_21_21
Type: TC
Location: 22099 - 22836 (+)
Type: TC
Location: 22099 - 22836 (+)
Gene ID: HRGMv2_0025_21_22
Type: pfam
Location: 23687 - 24184 (-)
Type: pfam
Location: 23687 - 24184 (-)
Gene ID: HRGMv2_0025_21_23
Type: CAZyme
Location: 24559 - 26295 (+)
Type: CAZyme
Location: 24559 - 26295 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.