dbCAN Logo

Cluster: HRGMv2_0024_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0024_1 HRGMv2_0024_1_417 433884 434867 - 3.A.1.5.15
TC HRGMv2_0024_1 HRGMv2_0024_1_418 434860 435651 - 3.A.1.5.1
TC HRGMv2_0024_1 HRGMv2_0024_1_419 435669 437234 - 3.A.1.5.20
TC HRGMv2_0024_1 HRGMv2_0024_1_420 437249 438085 - 3.A.1.5.38
TC HRGMv2_0024_1 HRGMv2_0024_1_421 438088 439032 - 3.A.1.5.11
pfam HRGMv2_0024_1 HRGMv2_0024_1_422 439680 440645 + AstE_AspA_cat
TC HRGMv2_0024_1 HRGMv2_0024_1_423 440692 441921 - 1.B.23.1.5
CAZyme HRGMv2_0024_1 HRGMv2_0024_1_424 442398 443261 + CE4
pfam HRGMv2_0024_1 HRGMv2_0024_1_425 443248 444069 + Polysacc_deac_1
STP HRGMv2_0024_1 HRGMv2_0024_1_426 444109 444942 + SBP_bac_3
TC HRGMv2_0024_1 HRGMv2_0024_1_427 445014 445670 + 3.A.1.3.15
TC HRGMv2_0024_1 HRGMv2_0024_1_428 445663 446388 + 3.A.1.3.15
pfam HRGMv2_0024_1 HRGMv2_0024_1_429 446397 447125 + Asp_Glu_race
pfam HRGMv2_0024_1 HRGMv2_0024_1_430 447224 448222 - SBP_bac_6 | SBP_bac_11
TC HRGMv2_0024_1 HRGMv2_0024_1_431 448709 450052 + 2.A.13.1.2
pfam HRGMv2_0024_1 HRGMv2_0024_1_432 450243 451052 + DUF3298 | PdaC
TC HRGMv2_0024_1 HRGMv2_0024_1_433 451091 452404 - 2.A.35.1.5
TC HRGMv2_0024_1 HRGMv2_0024_1_434 452527 453873 - 2.A.25.1.4
TC HRGMv2_0024_1 HRGMv2_0024_1_435 454228 455616 - 2.A.25.1.4
Gene ID: HRGMv2_0024_1_417
Type: TC
Location: 433884 - 434867 (-)
Gene ID: HRGMv2_0024_1_418
Type: TC
Location: 434860 - 435651 (-)
Gene ID: HRGMv2_0024_1_419
Type: TC
Location: 435669 - 437234 (-)
Gene ID: HRGMv2_0024_1_420
Type: TC
Location: 437249 - 438085 (-)
Gene ID: HRGMv2_0024_1_421
Type: TC
Location: 438088 - 439032 (-)
Gene ID: HRGMv2_0024_1_422
Type: pfam
Location: 439680 - 440645 (+)
Gene ID: HRGMv2_0024_1_423
Type: TC
Location: 440692 - 441921 (-)
Gene ID: HRGMv2_0024_1_424
Type: CAZyme
Location: 442398 - 443261 (+)
Gene ID: HRGMv2_0024_1_425
Type: pfam
Location: 443248 - 444069 (+)
Gene ID: HRGMv2_0024_1_426
Type: STP
Location: 444109 - 444942 (+)
Gene ID: HRGMv2_0024_1_427
Type: TC
Location: 445014 - 445670 (+)
Gene ID: HRGMv2_0024_1_428
Type: TC
Location: 445663 - 446388 (+)
Gene ID: HRGMv2_0024_1_429
Type: pfam
Location: 446397 - 447125 (+)
Gene ID: HRGMv2_0024_1_430
Type: pfam
Location: 447224 - 448222 (-)
Gene ID: HRGMv2_0024_1_431
Type: TC
Location: 448709 - 450052 (+)
Gene ID: HRGMv2_0024_1_432
Type: pfam
Location: 450243 - 451052 (+)
Gene ID: HRGMv2_0024_1_433
Type: TC
Location: 451091 - 452404 (-)
Gene ID: HRGMv2_0024_1_434
Type: TC
Location: 452527 - 453873 (-)
Gene ID: HRGMv2_0024_1_435
Type: TC
Location: 454228 - 455616 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List