Cluster: HRGMv2_0023_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0023
- CGC Family ID: CGCFAM_00198
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0023_38 | HRGMv2_0023_38_2 | 901 | 1833 | - | GT2 |
| pfam | HRGMv2_0023_38 | HRGMv2_0023_38_3 | 2892 | 3536 | - | Ribul_P_3_epim |
| pfam | HRGMv2_0023_38 | HRGMv2_0023_38_4 | 3536 | 4429 | - | RsgA_GTPase | RsgA_N |
| TC | HRGMv2_0023_38 | HRGMv2_0023_38_5 | 4433 | 6379 | - | 9.B.106.3.3 |
Gene ID: HRGMv2_0023_38_2
Type: CAZyme
Location: 901 - 1833 (-)
Type: CAZyme
Location: 901 - 1833 (-)
Gene ID: HRGMv2_0023_38_3
Type: pfam
Location: 2892 - 3536 (-)
Type: pfam
Location: 2892 - 3536 (-)
Gene ID: HRGMv2_0023_38_4
Type: pfam
Location: 3536 - 4429 (-)
Type: pfam
Location: 3536 - 4429 (-)
Gene ID: HRGMv2_0023_38_5
Type: TC
Location: 4433 - 6379 (-)
Type: TC
Location: 4433 - 6379 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.