dbCAN Logo

Cluster: HRGMv2_0023_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0023_28 HRGMv2_0023_28_4 1222 2340 + 2.A.6.2.35
TC HRGMv2_0023_28 HRGMv2_0023_28_5 2343 5426 + 2.A.6.3.5
pfam HRGMv2_0023_28 HRGMv2_0023_28_6 5589 6515 + RNase_HII
pfam HRGMv2_0023_28 HRGMv2_0023_28_7 6531 7382 + YdjC
TC HRGMv2_0023_28 HRGMv2_0023_28_8 7382 8395 + 4.D.2.1.4
pfam HRGMv2_0023_28 HRGMv2_0023_28_9 8454 9386 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_0023_28 HRGMv2_0023_28_10 9383 10942 + GT83
peptidase HRGMv2_0023_28 HRGMv2_0023_28_11 11134 11868 + S09.UPW
TC HRGMv2_0023_28 HRGMv2_0023_28_12 11971 12528 + 3.D.1.8.1
Gene ID: HRGMv2_0023_28_4
Type: TC
Location: 1222 - 2340 (+)
Gene ID: HRGMv2_0023_28_5
Type: TC
Location: 2343 - 5426 (+)
Gene ID: HRGMv2_0023_28_6
Type: pfam
Location: 5589 - 6515 (+)
Gene ID: HRGMv2_0023_28_7
Type: pfam
Location: 6531 - 7382 (+)
Gene ID: HRGMv2_0023_28_8
Type: TC
Location: 7382 - 8395 (+)
Gene ID: HRGMv2_0023_28_9
Type: pfam
Location: 8454 - 9386 (+)
Gene ID: HRGMv2_0023_28_10
Type: CAZyme
Location: 9383 - 10942 (+)
Gene ID: HRGMv2_0023_28_11
Type: peptidase
Location: 11134 - 11868 (+)
Gene ID: HRGMv2_0023_28_12
Type: TC
Location: 11971 - 12528 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List