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Cluster: HRGMv2_0023_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0023_24 HRGMv2_0023_24_12 15515 16996 + 3.A.1.2.20
TC HRGMv2_0023_24 HRGMv2_0023_24_13 17002 17931 + 3.A.1.2.1
TC HRGMv2_0023_24 HRGMv2_0023_24_14 17971 18879 + 3.A.1.2.13
pfam HRGMv2_0023_24 HRGMv2_0023_24_15 19281 20273 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_0023_24 HRGMv2_0023_24_16 20523 21404 + CE4
pfam HRGMv2_0023_24 HRGMv2_0023_24_17 21379 22197 + Polysacc_deac_1
STP HRGMv2_0023_24 HRGMv2_0023_24_18 22216 23046 + SBP_bac_3
TC HRGMv2_0023_24 HRGMv2_0023_24_19 23061 23717 + 3.A.1.3.15
TC HRGMv2_0023_24 HRGMv2_0023_24_20 23710 24432 + 3.A.1.3.15
Gene ID: HRGMv2_0023_24_12
Type: TC
Location: 15515 - 16996 (+)
Gene ID: HRGMv2_0023_24_13
Type: TC
Location: 17002 - 17931 (+)
Gene ID: HRGMv2_0023_24_14
Type: TC
Location: 17971 - 18879 (+)
Gene ID: HRGMv2_0023_24_15
Type: pfam
Location: 19281 - 20273 (+)
Gene ID: HRGMv2_0023_24_16
Type: CAZyme
Location: 20523 - 21404 (+)
Gene ID: HRGMv2_0023_24_17
Type: pfam
Location: 21379 - 22197 (+)
Gene ID: HRGMv2_0023_24_18
Type: STP
Location: 22216 - 23046 (+)
Gene ID: HRGMv2_0023_24_19
Type: TC
Location: 23061 - 23717 (+)
Gene ID: HRGMv2_0023_24_20
Type: TC
Location: 23710 - 24432 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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