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Cluster: HRGMv2_0023_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0023_8 HRGMv2_0023_8_11 13699 15282 + GT83
TC HRGMv2_0023_8 HRGMv2_0023_8_12 15737 17128 + 2.A.25.1.4
TC HRGMv2_0023_8 HRGMv2_0023_8_13 17271 17636 + 9.B.55.2.1
TC HRGMv2_0023_8 HRGMv2_0023_8_14 18524 19690 + 3.A.1.4.8
TC HRGMv2_0023_8 HRGMv2_0023_8_15 19794 20726 + 3.A.1.4.10
TC HRGMv2_0023_8 HRGMv2_0023_8_16 20729 21802 + 3.A.1.4.10
TC HRGMv2_0023_8 HRGMv2_0023_8_17 21795 22598 + 3.A.1.4.10
TC HRGMv2_0023_8 HRGMv2_0023_8_18 22585 23295 + 3.A.1.4.10
TC HRGMv2_0023_8 HRGMv2_0023_8_19 23427 24251 + 3.A.1.26.7
TC HRGMv2_0023_8 HRGMv2_0023_8_20 24242 25099 + 3.A.1.26.9
TC HRGMv2_0023_8 HRGMv2_0023_8_21 25099 25914 + 3.A.1.26.10
Gene ID: HRGMv2_0023_8_11
Type: CAZyme
Location: 13699 - 15282 (+)
Gene ID: HRGMv2_0023_8_12
Type: TC
Location: 15737 - 17128 (+)
Gene ID: HRGMv2_0023_8_13
Type: TC
Location: 17271 - 17636 (+)
Gene ID: HRGMv2_0023_8_14
Type: TC
Location: 18524 - 19690 (+)
Gene ID: HRGMv2_0023_8_15
Type: TC
Location: 19794 - 20726 (+)
Gene ID: HRGMv2_0023_8_16
Type: TC
Location: 20729 - 21802 (+)
Gene ID: HRGMv2_0023_8_17
Type: TC
Location: 21795 - 22598 (+)
Gene ID: HRGMv2_0023_8_18
Type: TC
Location: 22585 - 23295 (+)
Gene ID: HRGMv2_0023_8_19
Type: TC
Location: 23427 - 24251 (+)
Gene ID: HRGMv2_0023_8_20
Type: TC
Location: 24242 - 25099 (+)
Gene ID: HRGMv2_0023_8_21
Type: TC
Location: 25099 - 25914 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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