Cluster: HRGMv2_0023_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0023
- CGC Family ID: CGCFAM_05790
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0023_3 | HRGMv2_0023_3_30 | 35404 | 36810 | + | AA4 |
| CAZyme | HRGMv2_0023_3 | HRGMv2_0023_3_31 | 36938 | 38344 | + | AA4 |
| TC | HRGMv2_0023_3 | HRGMv2_0023_3_32 | 38619 | 40325 | + | 3.A.3.7.2 |
| TC | HRGMv2_0023_3 | HRGMv2_0023_3_33 | 40342 | 42378 | + | 3.A.3.7.1 |
| TC | HRGMv2_0023_3 | HRGMv2_0023_3_34 | 42394 | 42960 | + | 3.A.3.7.2 |
Gene ID: HRGMv2_0023_3_30
Type: CAZyme
Location: 35404 - 36810 (+)
Type: CAZyme
Location: 35404 - 36810 (+)
Gene ID: HRGMv2_0023_3_31
Type: CAZyme
Location: 36938 - 38344 (+)
Type: CAZyme
Location: 36938 - 38344 (+)
Gene ID: HRGMv2_0023_3_32
Type: TC
Location: 38619 - 40325 (+)
Type: TC
Location: 38619 - 40325 (+)
Gene ID: HRGMv2_0023_3_33
Type: TC
Location: 40342 - 42378 (+)
Type: TC
Location: 40342 - 42378 (+)
Gene ID: HRGMv2_0023_3_34
Type: TC
Location: 42394 - 42960 (+)
Type: TC
Location: 42394 - 42960 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.