Cluster: HRGMv2_0016_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0016
- CGC Family ID: CGCFAM_02568
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0016_2 | HRGMv2_0016_2_53 | 55582 | 57138 | + | 2.A.118.1.1 |
| peptidase | HRGMv2_0016_2 | HRGMv2_0016_2_54 | 57189 | 58628 | + | M20.UPC |
| pfam | HRGMv2_0016_2 | HRGMv2_0016_2_55 | 58640 | 59221 | + | DUF5714 |
| CAZyme | HRGMv2_0016_2 | HRGMv2_0016_2_56 | 59305 | 60945 | + | GT83 |
| NULL(UNKNOWN) | HRGMv2_0016_2 | HRGMv2_0016_2_57 | 60947 | 61438 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0016_2 | HRGMv2_0016_2_58 | 61656 | 62531 | - | HTH_1 |
| TC | HRGMv2_0016_2 | HRGMv2_0016_2_59 | 62771 | 63331 | + | 3.A.1.25.3 |
Gene ID: HRGMv2_0016_2_53
Type: TC
Location: 55582 - 57138 (+)
Type: TC
Location: 55582 - 57138 (+)
Gene ID: HRGMv2_0016_2_54
Type: peptidase
Location: 57189 - 58628 (+)
Type: peptidase
Location: 57189 - 58628 (+)
Gene ID: HRGMv2_0016_2_55
Type: pfam
Location: 58640 - 59221 (+)
Type: pfam
Location: 58640 - 59221 (+)
Gene ID: HRGMv2_0016_2_56
Type: CAZyme
Location: 59305 - 60945 (+)
Type: CAZyme
Location: 59305 - 60945 (+)
Gene ID: HRGMv2_0016_2_57
Type:
Location: 60947 - 61438 (+)
Type:
Location: 60947 - 61438 (+)
Gene ID: HRGMv2_0016_2_58
Type: TF
Location: 61656 - 62531 (-)
Type: TF
Location: 61656 - 62531 (-)
Gene ID: HRGMv2_0016_2_59
Type: TC
Location: 62771 - 63331 (+)
Type: TC
Location: 62771 - 63331 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Acidaminococcus
Species
Acidaminococcus timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.