Cluster: HRGMv2_0015_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0015
- CGC Family ID: CGCFAM_03971
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0015_4 | HRGMv2_0015_4_30 | 35652 | 37010 | + | 3.B.1.1.6 |
| CAZyme | HRGMv2_0015_4 | HRGMv2_0015_4_31 | 37109 | 39169 | - | GT51 |
| pfam | HRGMv2_0015_4 | HRGMv2_0015_4_32 | 39401 | 39919 | + | GreA_GreB | GreA_GreB_N |
| pfam | HRGMv2_0015_4 | HRGMv2_0015_4_33 | 39947 | 41929 | + | tRNA-synt_2 | tRNA_anti-codon | tRNA_bind |
| TC | HRGMv2_0015_4 | HRGMv2_0015_4_34 | 42062 | 43408 | + | 2.A.66.1.33 |
Gene ID: HRGMv2_0015_4_30
Type: TC
Location: 35652 - 37010 (+)
Type: TC
Location: 35652 - 37010 (+)
Gene ID: HRGMv2_0015_4_31
Type: CAZyme
Location: 37109 - 39169 (-)
Type: CAZyme
Location: 37109 - 39169 (-)
Gene ID: HRGMv2_0015_4_32
Type: pfam
Location: 39401 - 39919 (+)
Type: pfam
Location: 39401 - 39919 (+)
Gene ID: HRGMv2_0015_4_33
Type: pfam
Location: 39947 - 41929 (+)
Type: pfam
Location: 39947 - 41929 (+)
Gene ID: HRGMv2_0015_4_34
Type: TC
Location: 42062 - 43408 (+)
Type: TC
Location: 42062 - 43408 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Acidaminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.