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Cluster: HRGMv2_0013_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0013_20 HRGMv2_0013_20_1 196 3636 + 3.B.1.1.1
NULL(UNKNOWN) HRGMv2_0013_20 HRGMv2_0013_20_2 3748 5520 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0013_20 HRGMv2_0013_20_3 5613 7004 - 2.A.25.1.4
STP HRGMv2_0013_20 HRGMv2_0013_20_4 7452 8621 + HhH-GPD
STP HRGMv2_0013_20 HRGMv2_0013_20_5 8886 9524 + Sigma70_r4_2
TC HRGMv2_0013_20 HRGMv2_0013_20_6 9672 11009 + 2.A.23.3.3
TC HRGMv2_0013_20 HRGMv2_0013_20_7 11280 15539 + 1.B.23.1.5
pfam HRGMv2_0013_20 HRGMv2_0013_20_8 15671 16060 - GtrA_DPMS_TM
TC HRGMv2_0013_20 HRGMv2_0013_20_9 16070 17518 - 9.B.18.1.2
TC HRGMv2_0013_20 HRGMv2_0013_20_10 17531 18298 - 4.D.1.3.2
CAZyme HRGMv2_0013_20 HRGMv2_0013_20_11 18321 19268 - GT8
pfam HRGMv2_0013_20 HRGMv2_0013_20_12 19465 21282 + Sulfatase
pfam HRGMv2_0013_20 HRGMv2_0013_20_13 21414 22415 - adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_0013_20 HRGMv2_0013_20_14 22602 23609 + GT8
CAZyme HRGMv2_0013_20 HRGMv2_0013_20_15 23634 24686 + GT9
Gene ID: HRGMv2_0013_20_1
Type: TC
Location: 196 - 3636 (+)
Gene ID: HRGMv2_0013_20_2
Type:
Location: 3748 - 5520 (+)
Gene ID: HRGMv2_0013_20_3
Type: TC
Location: 5613 - 7004 (-)
Gene ID: HRGMv2_0013_20_4
Type: STP
Location: 7452 - 8621 (+)
Gene ID: HRGMv2_0013_20_5
Type: STP
Location: 8886 - 9524 (+)
Gene ID: HRGMv2_0013_20_6
Type: TC
Location: 9672 - 11009 (+)
Gene ID: HRGMv2_0013_20_7
Type: TC
Location: 11280 - 15539 (+)
Gene ID: HRGMv2_0013_20_8
Type: pfam
Location: 15671 - 16060 (-)
Gene ID: HRGMv2_0013_20_9
Type: TC
Location: 16070 - 17518 (-)
Gene ID: HRGMv2_0013_20_10
Type: TC
Location: 17531 - 18298 (-)
Gene ID: HRGMv2_0013_20_11
Type: CAZyme
Location: 18321 - 19268 (-)
Gene ID: HRGMv2_0013_20_12
Type: pfam
Location: 19465 - 21282 (+)
Gene ID: HRGMv2_0013_20_13
Type: pfam
Location: 21414 - 22415 (-)
Gene ID: HRGMv2_0013_20_14
Type: CAZyme
Location: 22602 - 23609 (+)
Gene ID: HRGMv2_0013_20_15
Type: CAZyme
Location: 23634 - 24686 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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