Cluster: HRGMv2_0011_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0011
- CGC Family ID: CGCFAM_03500
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0011_21 | HRGMv2_0011_21_57 | 37642 | 38988 | + | 2.A.38.1.1 |
| TC | HRGMv2_0011_21 | HRGMv2_0011_21_58 | 38991 | 40448 | + | 2.A.38.1.1 |
| TC | HRGMv2_0011_21 | HRGMv2_0011_21_59 | 40467 | 41927 | + | 2.A.38.1.3 |
| pfam | HRGMv2_0011_21 | HRGMv2_0011_21_60 | 42149 | 44209 | + | GTP_EFTU | EFG_C | MMR_HSR1 | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2 |
| CAZyme | HRGMv2_0011_21 | HRGMv2_0011_21_61 | 44823 | 45782 | + | GT2 |
| TC | HRGMv2_0011_21 | HRGMv2_0011_21_62 | 45872 | 46540 | + | 3.A.7.13.2 |
Gene ID: HRGMv2_0011_21_57
Type: TC
Location: 37642 - 38988 (+)
Type: TC
Location: 37642 - 38988 (+)
Gene ID: HRGMv2_0011_21_58
Type: TC
Location: 38991 - 40448 (+)
Type: TC
Location: 38991 - 40448 (+)
Gene ID: HRGMv2_0011_21_59
Type: TC
Location: 40467 - 41927 (+)
Type: TC
Location: 40467 - 41927 (+)
Gene ID: HRGMv2_0011_21_60
Type: pfam
Location: 42149 - 44209 (+)
Type: pfam
Location: 42149 - 44209 (+)
Gene ID: HRGMv2_0011_21_61
Type: CAZyme
Location: 44823 - 45782 (+)
Type: CAZyme
Location: 44823 - 45782 (+)
Gene ID: HRGMv2_0011_21_62
Type: TC
Location: 45872 - 46540 (+)
Type: TC
Location: 45872 - 46540 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.