dbCAN Logo

Cluster: HRGMv2_0011_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0011_11 HRGMv2_0011_11_10 11066 11680 + 2.A.115.2.8
TF HRGMv2_0011_11 HRGMv2_0011_11_11 11806 12012 + CSD
STP HRGMv2_0011_11 HRGMv2_0011_11_12 12304 13335 + SBP_bac_1
TC HRGMv2_0011_11 HRGMv2_0011_11_13 13435 14529 + 3.A.1.1.16
TC HRGMv2_0011_11 HRGMv2_0011_11_14 14526 16223 + 3.A.1.20.4
TC HRGMv2_0011_11 HRGMv2_0011_11_15 16226 17296 + 3.A.1.1.16
NULL(UNKNOWN) HRGMv2_0011_11 HRGMv2_0011_11_16 17478 17906 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0011_11 HRGMv2_0011_11_17 18170 18457 - LysM
CAZyme HRGMv2_0011_11 HRGMv2_0011_11_18 18666 20069 - AA4
Gene ID: HRGMv2_0011_11_10
Type: TC
Location: 11066 - 11680 (+)
Gene ID: HRGMv2_0011_11_11
Type: TF
Location: 11806 - 12012 (+)
Gene ID: HRGMv2_0011_11_12
Type: STP
Location: 12304 - 13335 (+)
Gene ID: HRGMv2_0011_11_13
Type: TC
Location: 13435 - 14529 (+)
Gene ID: HRGMv2_0011_11_14
Type: TC
Location: 14526 - 16223 (+)
Gene ID: HRGMv2_0011_11_15
Type: TC
Location: 16226 - 17296 (+)
Gene ID: HRGMv2_0011_11_16
Type:
Location: 17478 - 17906 (-)
Gene ID: HRGMv2_0011_11_17
Type: pfam
Location: 18170 - 18457 (-)
Gene ID: HRGMv2_0011_11_18
Type: CAZyme
Location: 18666 - 20069 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List