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Cluster: HRGMv2_0011_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0011_8 HRGMv2_0011_8_26 30221 31810 + GT83
TC HRGMv2_0011_8 HRGMv2_0011_8_27 31959 33158 + 2.A.1.59.4
NULL(UNKNOWN) HRGMv2_0011_8 HRGMv2_0011_8_28 33385 33552 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0011_8 HRGMv2_0011_8_29 33585 34931 + 2.A.25.1.4
NULL(UNKNOWN) HRGMv2_0011_8 HRGMv2_0011_8_30 35243 35446 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0011_8 HRGMv2_0011_8_31 35421 36800 + 2.A.25.1.4
TC HRGMv2_0011_8 HRGMv2_0011_8_32 37025 37390 + 9.B.55.2.1
TC HRGMv2_0011_8 HRGMv2_0011_8_33 37785 38609 + 3.A.1.26.7
TC HRGMv2_0011_8 HRGMv2_0011_8_34 38600 39457 + 3.A.1.26.9
TC HRGMv2_0011_8 HRGMv2_0011_8_35 39457 40272 + 3.A.1.25.6
Gene ID: HRGMv2_0011_8_26
Type: CAZyme
Location: 30221 - 31810 (+)
Gene ID: HRGMv2_0011_8_27
Type: TC
Location: 31959 - 33158 (+)
Gene ID: HRGMv2_0011_8_28
Type:
Location: 33385 - 33552 (+)
Gene ID: HRGMv2_0011_8_29
Type: TC
Location: 33585 - 34931 (+)
Gene ID: HRGMv2_0011_8_30
Type:
Location: 35243 - 35446 (+)
Gene ID: HRGMv2_0011_8_31
Type: TC
Location: 35421 - 36800 (+)
Gene ID: HRGMv2_0011_8_32
Type: TC
Location: 37025 - 37390 (+)
Gene ID: HRGMv2_0011_8_33
Type: TC
Location: 37785 - 38609 (+)
Gene ID: HRGMv2_0011_8_34
Type: TC
Location: 38600 - 39457 (+)
Gene ID: HRGMv2_0011_8_35
Type: TC
Location: 39457 - 40272 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0011_8_29 vegetarian > vegan 3.46827 0.03728

🧭 Explore Read Mapping of CGC

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