Cluster: HRGMv2_0011_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0011
- CGC Family ID: CGCFAM_05898
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0011_6 | HRGMv2_0011_6_42 | 41888 | 43447 | - | 2.A.25.1.5 |
| TF | HRGMv2_0011_6 | HRGMv2_0011_6_43 | 43725 | 44351 | + | 0043758 |
| pfam | HRGMv2_0011_6 | HRGMv2_0011_6_44 | 44317 | 45246 | + | AbiEii |
| CAZyme | HRGMv2_0011_6 | HRGMv2_0011_6_45 | 45398 | 46804 | + | AA4 |
| CAZyme | HRGMv2_0011_6 | HRGMv2_0011_6_46 | 46866 | 48266 | + | AA4 |
| CAZyme | HRGMv2_0011_6 | HRGMv2_0011_6_47 | 48341 | 49738 | + | AA4 |
Gene ID: HRGMv2_0011_6_42
Type: TC
Location: 41888 - 43447 (-)
Type: TC
Location: 41888 - 43447 (-)
Gene ID: HRGMv2_0011_6_43
Type: TF
Location: 43725 - 44351 (+)
Type: TF
Location: 43725 - 44351 (+)
Gene ID: HRGMv2_0011_6_44
Type: pfam
Location: 44317 - 45246 (+)
Type: pfam
Location: 44317 - 45246 (+)
Gene ID: HRGMv2_0011_6_45
Type: CAZyme
Location: 45398 - 46804 (+)
Type: CAZyme
Location: 45398 - 46804 (+)
Gene ID: HRGMv2_0011_6_46
Type: CAZyme
Location: 46866 - 48266 (+)
Type: CAZyme
Location: 46866 - 48266 (+)
Gene ID: HRGMv2_0011_6_47
Type: CAZyme
Location: 48341 - 49738 (+)
Type: CAZyme
Location: 48341 - 49738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0011_6_42 | vegetarian > omnivore | 1.01845 | 0.03622 |