Cluster: HRGMv2_0011_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0011
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0011_56 | HRGMv2_0011_56_3 | 3804 | 4661 | + | CE4 |
| pfam | HRGMv2_0011_56 | HRGMv2_0011_56_4 | 4658 | 5494 | + | Polysacc_deac_1 |
| STP | HRGMv2_0011_56 | HRGMv2_0011_56_5 | 5615 | 6451 | + | SBP_bac_3 |
| TC | HRGMv2_0011_56 | HRGMv2_0011_56_6 | 6467 | 7123 | + | 3.A.1.3.15 |
| TC | HRGMv2_0011_56 | HRGMv2_0011_56_7 | 7116 | 7841 | + | 3.A.1.3.15 |
Gene ID: HRGMv2_0011_56_3
Type: CAZyme
Location: 3804 - 4661 (+)
Type: CAZyme
Location: 3804 - 4661 (+)
Gene ID: HRGMv2_0011_56_4
Type: pfam
Location: 4658 - 5494 (+)
Type: pfam
Location: 4658 - 5494 (+)
Gene ID: HRGMv2_0011_56_5
Type: STP
Location: 5615 - 6451 (+)
Type: STP
Location: 5615 - 6451 (+)
Gene ID: HRGMv2_0011_56_6
Type: TC
Location: 6467 - 7123 (+)
Type: TC
Location: 6467 - 7123 (+)
Gene ID: HRGMv2_0011_56_7
Type: TC
Location: 7116 - 7841 (+)
Type: TC
Location: 7116 - 7841 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.