Cluster: HRGMv2_0011_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0011
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0011_32 | HRGMv2_0011_32_17 | 15716 | 16492 | - | 9.B.10.1.1 |
| pfam | HRGMv2_0011_32 | HRGMv2_0011_32_18 | 16494 | 16850 | - | PTPS |
| pfam | HRGMv2_0011_32 | HRGMv2_0011_32_19 | 16847 | 17326 | - | SpoU_methylase |
| CAZyme | HRGMv2_0011_32 | HRGMv2_0011_32_20 | 17370 | 18314 | - | GH73 |
| pfam | HRGMv2_0011_32 | HRGMv2_0011_32_21 | 18510 | 19181 | + | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 |
| TC | HRGMv2_0011_32 | HRGMv2_0011_32_22 | 19185 | 20435 | - | 2.A.16.2.2 |
Gene ID: HRGMv2_0011_32_17
Type: TC
Location: 15716 - 16492 (-)
Type: TC
Location: 15716 - 16492 (-)
Gene ID: HRGMv2_0011_32_18
Type: pfam
Location: 16494 - 16850 (-)
Type: pfam
Location: 16494 - 16850 (-)
Gene ID: HRGMv2_0011_32_19
Type: pfam
Location: 16847 - 17326 (-)
Type: pfam
Location: 16847 - 17326 (-)
Gene ID: HRGMv2_0011_32_20
Type: CAZyme
Location: 17370 - 18314 (-)
Type: CAZyme
Location: 17370 - 18314 (-)
Gene ID: HRGMv2_0011_32_21
Type: pfam
Location: 18510 - 19181 (+)
Type: pfam
Location: 18510 - 19181 (+)
Gene ID: HRGMv2_0011_32_22
Type: TC
Location: 19185 - 20435 (-)
Type: TC
Location: 19185 - 20435 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.