Cluster: HRGMv2_0007_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0007
- CGC Family ID: CGCFAM_03500
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0007_14 | HRGMv2_0007_14_1 | 870 | 2216 | + | 2.A.38.1.1 |
| TC | HRGMv2_0007_14 | HRGMv2_0007_14_2 | 2219 | 3676 | + | 2.A.38.1.3 |
| TC | HRGMv2_0007_14 | HRGMv2_0007_14_3 | 3695 | 5155 | + | 2.A.38.1.3 |
| pfam | HRGMv2_0007_14 | HRGMv2_0007_14_4 | 5376 | 7436 | + | GTP_EFTU | EFG_C | MMR_HSR1 | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2 |
| CAZyme | HRGMv2_0007_14 | HRGMv2_0007_14_5 | 8050 | 9006 | + | GT2 |
| TC | HRGMv2_0007_14 | HRGMv2_0007_14_6 | 9096 | 9764 | + | 3.A.7.13.2 |
Gene ID: HRGMv2_0007_14_1
Type: TC
Location: 870 - 2216 (+)
Type: TC
Location: 870 - 2216 (+)
Gene ID: HRGMv2_0007_14_2
Type: TC
Location: 2219 - 3676 (+)
Type: TC
Location: 2219 - 3676 (+)
Gene ID: HRGMv2_0007_14_3
Type: TC
Location: 3695 - 5155 (+)
Type: TC
Location: 3695 - 5155 (+)
Gene ID: HRGMv2_0007_14_4
Type: pfam
Location: 5376 - 7436 (+)
Type: pfam
Location: 5376 - 7436 (+)
Gene ID: HRGMv2_0007_14_5
Type: CAZyme
Location: 8050 - 9006 (+)
Type: CAZyme
Location: 8050 - 9006 (+)
Gene ID: HRGMv2_0007_14_6
Type: TC
Location: 9096 - 9764 (+)
Type: TC
Location: 9096 - 9764 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.