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Cluster: HRGMv2_0007_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0007_9 HRGMv2_0007_9_18 12906 14798 + 3.A.1.120.6
TC HRGMv2_0007_9 HRGMv2_0007_9_19 15099 16457 + 2.A.66.1.41
pfam HRGMv2_0007_9 HRGMv2_0007_9_20 16742 17950 + AAA_21
pfam HRGMv2_0007_9 HRGMv2_0007_9_21 17941 18618 + RloB
CAZyme HRGMv2_0007_9 HRGMv2_0007_9_22 19163 19918 + GT2
pfam HRGMv2_0007_9 HRGMv2_0007_9_23 19990 21774 - Sulfatase
CAZyme HRGMv2_0007_9 HRGMv2_0007_9_24 21917 23014 + GT4
Gene ID: HRGMv2_0007_9_18
Type: TC
Location: 12906 - 14798 (+)
Gene ID: HRGMv2_0007_9_19
Type: TC
Location: 15099 - 16457 (+)
Gene ID: HRGMv2_0007_9_20
Type: pfam
Location: 16742 - 17950 (+)
Gene ID: HRGMv2_0007_9_21
Type: pfam
Location: 17941 - 18618 (+)
Gene ID: HRGMv2_0007_9_22
Type: CAZyme
Location: 19163 - 19918 (+)
Gene ID: HRGMv2_0007_9_23
Type: pfam
Location: 19990 - 21774 (-)
Gene ID: HRGMv2_0007_9_24
Type: CAZyme
Location: 21917 - 23014 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0007_9_20 vegan > omnivore 4.12502 0.00186
HRGMv2_0007_9_21 vegan > omnivore 3.87685 0.02773

🧭 Explore Read Mapping of CGC

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