Cluster: GibsonMK_2016_SRR3131894_bin.2_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: GibsonMK_2016_SRR3131894_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_4 | 3366 | 4070 | + | 3.A.1.15.3 |
| TC | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_5 | 4063 | 4869 | + | 3.A.1.15.3 |
| TC | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_6 | 4879 | 6384 | + | 3.A.1.15.3 |
| CAZyme | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_7 | 6897 | 8576 | + | GH29 |
| CAZyme | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_8 | 8613 | 10700 | - | GH92 |
| CAZyme | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_9 | 10871 | 12151 | + | GH125 |
| CAZyme | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_10 | 12207 | 14852 | + | GH38 |
| pfam | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_11 | 14949 | 15818 | + | ROK |
| CAZyme | GibsonMK_2016_SRR3131894_bin.2_k141_2959 | GibsonMK_2016_SRR3131894_bin.2_k141_2959_12 | 15812 | 17692 | + | GH20 |
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_4
Type: TC
Location: 3366 - 4070 (+)
Type: TC
Location: 3366 - 4070 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_5
Type: TC
Location: 4063 - 4869 (+)
Type: TC
Location: 4063 - 4869 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_6
Type: TC
Location: 4879 - 6384 (+)
Type: TC
Location: 4879 - 6384 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_7
Type: CAZyme
Location: 6897 - 8576 (+)
Type: CAZyme
Location: 6897 - 8576 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_8
Type: CAZyme
Location: 8613 - 10700 (-)
Type: CAZyme
Location: 8613 - 10700 (-)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_9
Type: CAZyme
Location: 10871 - 12151 (+)
Type: CAZyme
Location: 10871 - 12151 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_10
Type: CAZyme
Location: 12207 - 14852 (+)
Type: CAZyme
Location: 12207 - 14852 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_11
Type: pfam
Location: 14949 - 15818 (+)
Type: pfam
Location: 14949 - 15818 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2959_12
Type: CAZyme
Location: 15812 - 17692 (+)
Type: CAZyme
Location: 15812 - 17692 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp900546335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.