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Cluster: GibsonMK_2016_SRR3131894_bin.2_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GibsonMK_2016_SRR3131894_bin.2_k141_2717 GibsonMK_2016_SRR3131894_bin.2_k141_2717_1 2 931 - 3.A.1.5.25
CAZyme GibsonMK_2016_SRR3131894_bin.2_k141_2717 GibsonMK_2016_SRR3131894_bin.2_k141_2717_2 1101 2711 - GH13_31
pfam GibsonMK_2016_SRR3131894_bin.2_k141_2717 GibsonMK_2016_SRR3131894_bin.2_k141_2717_3 2863 4347 + DUF1846 | DUF1846_C
pfam GibsonMK_2016_SRR3131894_bin.2_k141_2717 GibsonMK_2016_SRR3131894_bin.2_k141_2717_4 4439 4921 + LuxS
TC GibsonMK_2016_SRR3131894_bin.2_k141_2717 GibsonMK_2016_SRR3131894_bin.2_k141_2717_5 4980 7085 - 3.A.9.1.2
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2717_1
Type: TC
Location: 2 - 931 (-)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2717_2
Type: CAZyme
Location: 1101 - 2711 (-)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2717_3
Type: pfam
Location: 2863 - 4347 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2717_4
Type: pfam
Location: 4439 - 4921 (+)
Gene ID: GibsonMK_2016_SRR3131894_bin.2_k141_2717_5
Type: TC
Location: 4980 - 7085 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GibsonMK_2016_SRR3131894_bin.2_k141_2717_5 vegetarian > omnivore 1.48257 0.01386
GibsonMK_2016_SRR3131894_bin.2_k141_2717_5 vegetarian > vegan 1.05561 0.02605

🧭 Explore Read Mapping of CGC

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