Cluster: GasparriniAJ_2019_SRR9865829_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865829_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075 | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_18 | 17597 | 19060 | + | 2.A.3.2.3 |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075 | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_19 | 19823 | 22183 | + | 9.A.8.1.6 |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075 | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_20 | 22305 | 23501 | + | 2.A.1.2.18 |
| CAZyme | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075 | GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_21 | 23655 | 25031 | + | GH13_20 |
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_18
Type: TC
Location: 17597 - 19060 (+)
Type: TC
Location: 17597 - 19060 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_19
Type: TC
Location: 19823 - 22183 (+)
Type: TC
Location: 19823 - 22183 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_20
Type: TC
Location: 22305 - 23501 (+)
Type: TC
Location: 22305 - 23501 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_21
Type: CAZyme
Location: 23655 - 25031 (+)
Type: CAZyme
Location: 23655 - 25031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865829_bin.4_k141_6075_18 | vegan > omnivore | 1.31357 | 0.02934 |