Cluster: GasparriniAJ_2019_SRR9865829_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865829_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_40 | 43629 | 44798 | - | CE9 |
| STP | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_41 | 44914 | 46080 | - | SIS | SIS |
| TF | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_42 | 46192 | 46926 | - | GntR |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_43 | 47014 | 47442 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_44 | 47524 | 48147 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_45 | 48336 | 49175 | - | 4.A.6.1.18 |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_46 | 49165 | 50052 | - | 4.A.6.1.18 |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_47 | 50146 | 50610 | - | 4.A.6.1.18 |
| CAZyme | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_48 | 50613 | 52409 | - | GH35 |
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_40
Type: CAZyme
Location: 43629 - 44798 (-)
Type: CAZyme
Location: 43629 - 44798 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_41
Type: STP
Location: 44914 - 46080 (-)
Type: STP
Location: 44914 - 46080 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_42
Type: TF
Location: 46192 - 46926 (-)
Type: TF
Location: 46192 - 46926 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_43
Type: TC
Location: 47014 - 47442 (-)
Type: TC
Location: 47014 - 47442 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_44
Type:
Location: 47524 - 48147 (-)
Type:
Location: 47524 - 48147 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_45
Type: TC
Location: 48336 - 49175 (-)
Type: TC
Location: 48336 - 49175 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_46
Type: TC
Location: 49165 - 50052 (-)
Type: TC
Location: 49165 - 50052 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_47
Type: TC
Location: 50146 - 50610 (-)
Type: TC
Location: 50146 - 50610 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_48
Type: CAZyme
Location: 50613 - 52409 (-)
Type: CAZyme
Location: 50613 - 52409 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_45 | vegetarian > vegan | 2.55573 | 0.02517 |
| GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_47 | vegetarian > vegan | 3.44303 | 0.02517 |
| GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_48 | vegetarian > vegan | 2.84399 | 0.02517 |