Cluster: GasparriniAJ_2019_SRR9865829_bin.4_CGC10
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865829_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_6 | 4759 | 5097 | - | 4.A.3.1.2 |
| TF | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_7 | 5312 | 6316 | - | LacI |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_8 | 6674 | 8449 | + | 4.A.3.1.1 |
| CAZyme | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_9 | 8516 | 9955 | + | GH1 |
| TF | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_10 | 10218 | 11255 | - | LacI |
| CAZyme | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_11 | 11597 | 13039 | + | GH1 |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_12 | 13216 | 14976 | + | 4.A.3.1.1 |
| TF | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_13 | 15310 | 16320 | - | LacI |
| TC | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_14 | 16596 | 18374 | + | 4.A.3.1.1 |
| CAZyme | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100 | GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_15 | 18450 | 19871 | + | GH1 |
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_6
Type: TC
Location: 4759 - 5097 (-)
Type: TC
Location: 4759 - 5097 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_7
Type: TF
Location: 5312 - 6316 (-)
Type: TF
Location: 5312 - 6316 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_8
Type: TC
Location: 6674 - 8449 (+)
Type: TC
Location: 6674 - 8449 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_9
Type: CAZyme
Location: 8516 - 9955 (+)
Type: CAZyme
Location: 8516 - 9955 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_10
Type: TF
Location: 10218 - 11255 (-)
Type: TF
Location: 10218 - 11255 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_11
Type: CAZyme
Location: 11597 - 13039 (+)
Type: CAZyme
Location: 11597 - 13039 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_12
Type: TC
Location: 13216 - 14976 (+)
Type: TC
Location: 13216 - 14976 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_13
Type: TF
Location: 15310 - 16320 (-)
Type: TF
Location: 15310 - 16320 (-)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_14
Type: TC
Location: 16596 - 18374 (+)
Type: TC
Location: 16596 - 18374 (+)
Gene ID: GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_15
Type: CAZyme
Location: 18450 - 19871 (+)
Type: CAZyme
Location: 18450 - 19871 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865829_bin.4_k141_17100_10 | vegetarian > omnivore | 1.09298 | 0.01867 |