Cluster: GasparriniAJ_2019_SRR9865778_bin.2_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865778_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_103 | 104607 | 106814 | - | GH13_30 |
| STP | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_104 | 106926 | 107672 | - | STAS |
| STP | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_105 | 107751 | 110096 | - | GAF | SpoIIE |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_106 | 110843 | 111871 | - | 3.A.1.5.36 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_107 | 111872 | 112963 | - | 3.A.1.5.34 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_108 | 112966 | 113901 | - | 3.A.1.5.11 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_109 | 113916 | 114953 | - | 3.A.1.5.37 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767 | GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_110 | 115110 | 116786 | - | 3.A.1.5.35 |
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_103
Type: CAZyme
Location: 104607 - 106814 (-)
Type: CAZyme
Location: 104607 - 106814 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_104
Type: STP
Location: 106926 - 107672 (-)
Type: STP
Location: 106926 - 107672 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_105
Type: STP
Location: 107751 - 110096 (-)
Type: STP
Location: 107751 - 110096 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_106
Type: TC
Location: 110843 - 111871 (-)
Type: TC
Location: 110843 - 111871 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_107
Type: TC
Location: 111872 - 112963 (-)
Type: TC
Location: 111872 - 112963 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_108
Type: TC
Location: 112966 - 113901 (-)
Type: TC
Location: 112966 - 113901 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_109
Type: TC
Location: 113916 - 114953 (-)
Type: TC
Location: 113916 - 114953 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_9767_110
Type: TC
Location: 115110 - 116786 (-)
Type: TC
Location: 115110 - 116786 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.