Cluster: GasparriniAJ_2019_SRR9865778_bin.2_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865778_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_53 | 61025 | 61819 | - | 3.A.1.34.1 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_54 | 61812 | 62735 | - | 3.A.1.34.1 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_55 | 62939 | 63919 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_56 | 64080 | 64868 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_57 | 65128 | 66531 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_58 | 66713 | 67276 | - | 4.A.1.2.6 |
| peptidase | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_59 | 67520 | 68419 | + | S09.UPW |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_60 | 68892 | 71252 | + | 9.A.8.1.6 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_61 | 71374 | 72570 | + | 2.A.1.2.18 |
| CAZyme | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951 | GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_62 | 72725 | 74101 | + | GH13_20 |
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_53
Type: TC
Location: 61025 - 61819 (-)
Type: TC
Location: 61025 - 61819 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_54
Type: TC
Location: 61812 - 62735 (-)
Type: TC
Location: 61812 - 62735 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_55
Type: TC
Location: 62939 - 63919 (-)
Type: TC
Location: 62939 - 63919 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_56
Type:
Location: 64080 - 64868 (-)
Type:
Location: 64080 - 64868 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_57
Type: pfam
Location: 65128 - 66531 (-)
Type: pfam
Location: 65128 - 66531 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_58
Type: TC
Location: 66713 - 67276 (-)
Type: TC
Location: 66713 - 67276 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_59
Type: peptidase
Location: 67520 - 68419 (+)
Type: peptidase
Location: 67520 - 68419 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_60
Type: TC
Location: 68892 - 71252 (+)
Type: TC
Location: 68892 - 71252 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_61
Type: TC
Location: 71374 - 72570 (+)
Type: TC
Location: 71374 - 72570 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_39951_62
Type: CAZyme
Location: 72725 - 74101 (+)
Type: CAZyme
Location: 72725 - 74101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.