Cluster: GasparriniAJ_2019_SRR9865778_bin.2_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865778_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_71 | 86916 | 88085 | - | CE9 |
| STP | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_72 | 88204 | 89370 | - | SIS | SIS |
| TF | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_73 | 89485 | 90216 | - | GntR |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_74 | 90401 | 91483 | - | 4.A.6.1.4 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_75 | 91473 | 92273 | - | 4.A.6.1.4 |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_76 | 92364 | 92846 | - | 4.A.6.1.4 |
| pfam | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_77 | 92883 | 93164 | - | YajC |
| TC | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 | GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_78 | 93164 | 93607 | - | 4.A.6.1.16 |
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_71
Type: CAZyme
Location: 86916 - 88085 (-)
Type: CAZyme
Location: 86916 - 88085 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_72
Type: STP
Location: 88204 - 89370 (-)
Type: STP
Location: 88204 - 89370 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_73
Type: TF
Location: 89485 - 90216 (-)
Type: TF
Location: 89485 - 90216 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_74
Type: TC
Location: 90401 - 91483 (-)
Type: TC
Location: 90401 - 91483 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_75
Type: TC
Location: 91473 - 92273 (-)
Type: TC
Location: 91473 - 92273 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_76
Type: TC
Location: 92364 - 92846 (-)
Type: TC
Location: 92364 - 92846 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_77
Type: pfam
Location: 92883 - 93164 (-)
Type: pfam
Location: 92883 - 93164 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_78
Type: TC
Location: 93164 - 93607 (-)
Type: TC
Location: 93164 - 93607 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.