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Cluster: GasparriniAJ_2019_SRR9865778_bin.2_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_49 58183 58521 - 4.A.3.1.2
TF GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_50 58736 59740 - LacI
TC GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_51 60098 61873 + 4.A.3.1.1
CAZyme GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_52 61944 63383 + GH1
TF GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_53 63573 64610 - LacI
CAZyme GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_54 64951 66393 + GH1
TC GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_55 66570 68330 + 4.A.3.1.1
TF GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_56 68664 69674 - LacI
TC GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_57 69949 71727 + 4.A.3.1.1
CAZyme GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_58 71802 73223 + GH1
pfam GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_59 73590 74822 + Fic
STP GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_60 74819 75199 - DeoRC
TC GasparriniAJ_2019_SRR9865778_bin.2_k141_32425 GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_61 75362 77056 - 4.A.3.1.1
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_49
Type: TC
Location: 58183 - 58521 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_50
Type: TF
Location: 58736 - 59740 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_51
Type: TC
Location: 60098 - 61873 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_52
Type: CAZyme
Location: 61944 - 63383 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_53
Type: TF
Location: 63573 - 64610 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_54
Type: CAZyme
Location: 64951 - 66393 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_55
Type: TC
Location: 66570 - 68330 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_56
Type: TF
Location: 68664 - 69674 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_57
Type: TC
Location: 69949 - 71727 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_58
Type: CAZyme
Location: 71802 - 73223 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_59
Type: pfam
Location: 73590 - 74822 (+)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_60
Type: STP
Location: 74819 - 75199 (-)
Gene ID: GasparriniAJ_2019_SRR9865778_bin.2_k141_32425_61
Type: TC
Location: 75362 - 77056 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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