Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_26 | 20024 | 21421 | + | 2.A.66.1.3 |
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_27 | 21460 | 22284 | - | GT2 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_28 | 22308 | 23783 | - | S1 | RNase_E_G | RNase_E_G_Thio |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_29 | 23901 | 25415 | + | 2.A.21.2.3 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_26
Type: TC
Location: 20024 - 21421 (+)
Type: TC
Location: 20024 - 21421 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_27
Type: CAZyme
Location: 21460 - 22284 (-)
Type: CAZyme
Location: 21460 - 22284 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_28
Type: pfam
Location: 22308 - 23783 (-)
Type: pfam
Location: 22308 - 23783 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3646_29
Type: TC
Location: 23901 - 25415 (+)
Type: TC
Location: 23901 - 25415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.