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Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_30 29122 29613 - 9.B.105.1.1
pfam GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_31 29730 31100 - Hexapep | Hexapep | NTP_transferase | IspD | NTP_transf_3 | Hexapep_2 | Hexapep_2
peptidase GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_32 31359 32996 + C26.964
CAZyme GasparriniAJ_2019_SRR9865738_bin.1_k141_3538 GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_33 33119 34054 + GT2
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_30
Type: TC
Location: 29122 - 29613 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_31
Type: pfam
Location: 29730 - 31100 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_32
Type: peptidase
Location: 31359 - 32996 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_33
Type: CAZyme
Location: 33119 - 34054 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_30 vegan > omnivore 1.19934 0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_3538_30 vegetarian > omnivore 1.15023 0.00755

🧭 Explore Read Mapping of CGC

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