Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_22 | 24338 | 25282 | + | 2.A.16.1.2 |
| TF | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_23 | 25363 | 26076 | - | GntR |
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_24 | 26269 | 30042 | + | GH77 | GT35 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_25 | 30052 | 30843 | + | Exo_endo_phos |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492 | GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_26 | 30854 | 32518 | + | 4.A.1.1.11 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_22
Type: TC
Location: 24338 - 25282 (+)
Type: TC
Location: 24338 - 25282 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_23
Type: TF
Location: 25363 - 26076 (-)
Type: TF
Location: 25363 - 26076 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_24
Type: CAZyme
Location: 26269 - 30042 (+)
Type: CAZyme
Location: 26269 - 30042 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_25
Type: pfam
Location: 30052 - 30843 (+)
Type: pfam
Location: 30052 - 30843 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_3492_26
Type: TC
Location: 30854 - 32518 (+)
Type: TC
Location: 30854 - 32518 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.