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Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_5 2191 2907 - 5.A.3.2.1
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_6 2900 3835 - 5.A.3.2.1
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_7 3837 6260 - 5.A.3.2.1
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_8 6309 6920 - 5.A.3.2.1
pfam GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_9 7196 8005 + FdhD-NarQ
CAZyme GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_10 8073 8990 + GT8
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_11 9051 10097 - 3.A.1.20.2
pfam GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_12 10246 12423 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_13 12532 13536 + 3.A.1.5.27
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_14 13549 14445 + 3.A.1.5.27
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_15 14454 15437 + 3.A.1.5.27
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_16 15430 16413 + 3.A.1.5.27
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_1649 GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_17 16454 17632 - 2.A.1.2.18
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_5
Type: TC
Location: 2191 - 2907 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_6
Type: TC
Location: 2900 - 3835 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_7
Type: TC
Location: 3837 - 6260 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_8
Type: TC
Location: 6309 - 6920 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_9
Type: pfam
Location: 7196 - 8005 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_10
Type: CAZyme
Location: 8073 - 8990 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_11
Type: TC
Location: 9051 - 10097 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_12
Type: pfam
Location: 10246 - 12423 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_13
Type: TC
Location: 12532 - 13536 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_14
Type: TC
Location: 13549 - 14445 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_15
Type: TC
Location: 14454 - 15437 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_16
Type: TC
Location: 15430 - 16413 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_17
Type: TC
Location: 16454 - 17632 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_7 vegan > omnivore 1.22602 0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_8 vegan > omnivore 1.27827 0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_1649_16 vegan > omnivore 1.26689 0.01144

🧭 Explore Read Mapping of CGC

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