Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- CGC Family ID: CGCFAM_00908
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_31 | 29911 | 30954 | + | GH3 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_32 | 30951 | 32123 | + | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_33 | 32157 | 32990 | - | 3.A.1.15.4 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_34 | 32983 | 33834 | - | 3.A.1.15.4 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_35 | 33838 | 33987 | - | 3.A.1.15.4 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_31
Type: CAZyme
Location: 29911 - 30954 (+)
Type: CAZyme
Location: 29911 - 30954 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_32
Type: pfam
Location: 30951 - 32123 (+)
Type: pfam
Location: 30951 - 32123 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_33
Type: TC
Location: 32157 - 32990 (-)
Type: TC
Location: 32157 - 32990 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_34
Type: TC
Location: 32983 - 33834 (-)
Type: TC
Location: 32983 - 33834 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_35
Type: TC
Location: 33838 - 33987 (-)
Type: TC
Location: 33838 - 33987 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_32 | vegetarian > omnivore | 1.19055 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_33 | vegan > omnivore | 2.43673 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_33 | vegetarian > omnivore | 1.74883 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_34 | vegan > omnivore | 2.30688 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1389_34 | vegetarian > omnivore | 1.74430 | 0.00755 |