Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_6 | 5227 | 6354 | + | GH102 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_7 | 6354 | 7115 | + | ThiF |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_8 | 7283 | 8269 | + | 3.A.1.15.5 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_9 | 8388 | 10523 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014 | GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_10 | 10558 | 12462 | - | 2.A.37.1.2 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_6
Type: CAZyme
Location: 5227 - 6354 (+)
Type: CAZyme
Location: 5227 - 6354 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_7
Type: pfam
Location: 6354 - 7115 (+)
Type: pfam
Location: 6354 - 7115 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_8
Type: TC
Location: 7283 - 8269 (+)
Type: TC
Location: 7283 - 8269 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_9
Type: pfam
Location: 8388 - 10523 (+)
Type: pfam
Location: 8388 - 10523 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_10
Type: TC
Location: 10558 - 12462 (-)
Type: TC
Location: 10558 - 12462 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_6 | vegetarian > omnivore | 1.15275 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_7 | vegan > omnivore | 1.38296 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_7 | vegetarian > omnivore | 1.51589 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_9 | vegan > omnivore | 1.46801 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_9 | vegetarian > omnivore | 1.46299 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_1014_10 | vegetarian > omnivore | 1.00236 | 0.00755 |