Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_8 | 12131 | 13969 | + | 3.A.18.1.1 |
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_9 | 14065 | 15459 | + | GH23 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_10 | 15516 | 15659 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_11 | 15707 | 16801 | - | TbpB_B_D |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_12 | 16962 | 19262 | + | 1.B.14.2.1 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_13 | 19330 | 19647 | - | Ribosomal_S30AE |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416 | GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_14 | 19889 | 21259 | - | 2.A.25.1.4 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_8
Type: TC
Location: 12131 - 13969 (+)
Type: TC
Location: 12131 - 13969 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_9
Type: CAZyme
Location: 14065 - 15459 (+)
Type: CAZyme
Location: 14065 - 15459 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_10
Type:
Location: 15516 - 15659 (+)
Type:
Location: 15516 - 15659 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_11
Type: pfam
Location: 15707 - 16801 (-)
Type: pfam
Location: 15707 - 16801 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_12
Type: TC
Location: 16962 - 19262 (+)
Type: TC
Location: 16962 - 19262 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_13
Type: pfam
Location: 19330 - 19647 (-)
Type: pfam
Location: 19330 - 19647 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_14
Type: TC
Location: 19889 - 21259 (-)
Type: TC
Location: 19889 - 21259 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_9 | vegetarian > omnivore | 1.56347 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_8416_10 | vegetarian > omnivore | 1.71396 | 0.00755 |