Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC22
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_7755 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_10 | 10938 | 12956 | - | GT41 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_7755 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_11 | 12996 | 14333 | - | UPF0004 | TRAM | Radical_SAM | TRAM_2 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7755 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_12 | 14462 | 15214 | + | 9.B.20.2.2 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_10
Type: CAZyme
Location: 10938 - 12956 (-)
Type: CAZyme
Location: 10938 - 12956 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_11
Type: pfam
Location: 12996 - 14333 (-)
Type: pfam
Location: 12996 - 14333 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_12
Type: TC
Location: 14462 - 15214 (+)
Type: TC
Location: 14462 - 15214 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7755_12 | vegetarian > omnivore | 1.23407 | 0.00755 |