Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC20
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_43 | 42511 | 43305 | - | 1.A.16.2.1 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_44 | 43891 | 44115 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_45 | 44985 | 45440 | + | DUF411 |
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_46 | 45454 | 47001 | + | AA1 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_47 | 47095 | 47562 | - | SSB |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_48 | 47725 | 50556 | + | UvrA_DNA-bind | UvrA_inter |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_49 | 50613 | 52139 | - | 2.A.1.3.2 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_50 | 52148 | 53317 | - | 8.A.1.1.1 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_51 | 53623 | 57336 | + | 1.B.40.2.2 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_43
Type: TC
Location: 42511 - 43305 (-)
Type: TC
Location: 42511 - 43305 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_44
Type:
Location: 43891 - 44115 (-)
Type:
Location: 43891 - 44115 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_45
Type: pfam
Location: 44985 - 45440 (+)
Type: pfam
Location: 44985 - 45440 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_46
Type: CAZyme
Location: 45454 - 47001 (+)
Type: CAZyme
Location: 45454 - 47001 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_47
Type: pfam
Location: 47095 - 47562 (-)
Type: pfam
Location: 47095 - 47562 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_48
Type: pfam
Location: 47725 - 50556 (+)
Type: pfam
Location: 47725 - 50556 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_49
Type: TC
Location: 50613 - 52139 (-)
Type: TC
Location: 50613 - 52139 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_50
Type: TC
Location: 52148 - 53317 (-)
Type: TC
Location: 52148 - 53317 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_51
Type: TC
Location: 53623 - 57336 (+)
Type: TC
Location: 53623 - 57336 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_44 | vegetarian > omnivore | 2.33715 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_44 | vegetarian > vegan | 2.13935 | 0.02132 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_47 | vegan > omnivore | 1.56535 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_49 | vegan > omnivore | 1.17311 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_49 | vegetarian > omnivore | 1.33622 | 0.00755 |