dbCAN HGM

Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC2

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_2	415	2061	+	3.A.1.5.27
pfam	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3	2128	2760	+	PNPOx_N \| PNP_phzG_C \| Pyridox_oxase_2
CAZyme	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_4	2837	3943	-	GH177
pfam	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_5	3954	5027	-	GFO_IDH_MocA \| GFO_IDH_MocA_C \| NAD_binding_3 \| F420_oxidored \| GFO_IDH_MocA_C3
TF	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_6	5017	5727	-	GntR
TC	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_7	5901	7130	+	2.A.1.12.1
TC	GasparriniAJ_2019_SRR9865738_bin.1_k141_529	GasparriniAJ_2019_SRR9865738_bin.1_k141_529_8	7286	7693	+	2.A.47.5.2

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_2
Type: TC
Location: 415 - 2061 (+)

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3
Type: pfam
Location: 2128 - 2760 (+)

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_4
Type: CAZyme
Location: 2837 - 3943 (-)

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_5
Type: pfam
Location: 3954 - 5027 (-)

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_6
Type: TF
Location: 5017 - 5727 (-)

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_7
Type: TC
Location: 5901 - 7130 (+)

Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_529_8
Type: TC
Location: 7286 - 7693 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_2	vegan > omnivore	1.09362	0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3	vegetarian > omnivore	1.05543	0.00755

Gene ID	Condition Pair	log2FC	FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_2	vegan > omnivore	1.15928	0.00245
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3	vegan > omnivore	1.24867	0.00245
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3	vegan > flexitarian	1.11362	0.02132
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_4	vegan > omnivore	1.94363	0.00245
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_5	vegan > omnivore	1.91073	0.00245
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_8	vegan > omnivore	2.14364	0.00245

Gene ID	Condition Pair	log2FC	FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_2	UC > CD	1.07258	0.00027
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3	nonIBD > CD	3.97738	0.00082
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_3	UC > CD	2.96293	0.00027
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_5	UC > CD	3.85788	0.00027
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_5	nonIBD > CD	4.57572	0.00082
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_6	nonIBD > CD	1.33654	0.00082
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_7	nonIBD > CD	1.77469	0.00082
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_8	UC > CD	19.07835	0.00027
GasparriniAJ_2019_SRR9865738_bin.1_k141_529_8	nonIBD > CD	19.84680	0.00082