Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_27 | 24189 | 25430 | - | GT2 |
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_28 | 25440 | 27356 | - | CE4 | GH153 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_29 | 27378 | 29795 | - | 1.B.55.1.3 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_30 | 30003 | 30770 | - | 3.A.1.14.8 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_31 | 30770 | 31753 | - | 3.A.1.14.1 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_32 | 31753 | 32742 | - | 3.A.1.14.1 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_33 | 32742 | 33632 | - | 3.A.1.14.1 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_27
Type: CAZyme
Location: 24189 - 25430 (-)
Type: CAZyme
Location: 24189 - 25430 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_28
Type: CAZyme
Location: 25440 - 27356 (-)
Type: CAZyme
Location: 25440 - 27356 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_29
Type: TC
Location: 27378 - 29795 (-)
Type: TC
Location: 27378 - 29795 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_30
Type: TC
Location: 30003 - 30770 (-)
Type: TC
Location: 30003 - 30770 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_31
Type: TC
Location: 30770 - 31753 (-)
Type: TC
Location: 30770 - 31753 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_32
Type: TC
Location: 31753 - 32742 (-)
Type: TC
Location: 31753 - 32742 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_33
Type: TC
Location: 32742 - 33632 (-)
Type: TC
Location: 32742 - 33632 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_32 | vegetarian > omnivore | 1.47399 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7615_33 | vegetarian > omnivore | 1.51411 | 0.00755 |