Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_7118 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_4 | 3069 | 3884 | + | GT2 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7118 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_5 | 3881 | 5257 | + | 2.A.38.1.1 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_7118 | GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_6 | 5336 | 5722 | + | 1.A.22.1.1 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_4
Type: CAZyme
Location: 3069 - 3884 (+)
Type: CAZyme
Location: 3069 - 3884 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_5
Type: TC
Location: 3881 - 5257 (+)
Type: TC
Location: 3881 - 5257 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_6
Type: TC
Location: 5336 - 5722 (+)
Type: TC
Location: 5336 - 5722 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_4 | vegan > omnivore | 1.64561 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_4 | vegetarian > omnivore | 1.15416 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_5 | vegetarian > omnivore | 1.34562 | 0.00711 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_6 | vegan > omnivore | 1.81338 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_7118_6 | vegetarian > omnivore | 3.13522 | 0.00755 |