Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_29 | 27153 | 28997 | - | 3.A.1.106.2 |
| TF | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_30 | 29074 | 29964 | - | HTH_AraC | HTH_AraC |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_31 | 30067 | 30411 | + | CMD |
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_32 | 30482 | 31537 | - | GT9 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_33 | 31639 | 31947 | - | MORN_2 | MORN_2 | MORN_2 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_34 | 32247 | 32972 | + | RIO1 | APH | Kdo |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_35 | 33017 | 34846 | - | 2.A.37.1.10 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_29
Type: TC
Location: 27153 - 28997 (-)
Type: TC
Location: 27153 - 28997 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_30
Type: TF
Location: 29074 - 29964 (-)
Type: TF
Location: 29074 - 29964 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_31
Type: pfam
Location: 30067 - 30411 (+)
Type: pfam
Location: 30067 - 30411 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_32
Type: CAZyme
Location: 30482 - 31537 (-)
Type: CAZyme
Location: 30482 - 31537 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_33
Type: pfam
Location: 31639 - 31947 (-)
Type: pfam
Location: 31639 - 31947 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_34
Type: pfam
Location: 32247 - 32972 (+)
Type: pfam
Location: 32247 - 32972 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_35
Type: TC
Location: 33017 - 34846 (-)
Type: TC
Location: 33017 - 34846 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_29 | vegetarian > vegan | 1.05696 | 0.03856 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_30 | vegetarian > vegan | 1.17992 | 0.03045 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_31 | vegan > omnivore | 1.23026 | 0.01144 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_31 | vegetarian > omnivore | 1.62458 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_32 | vegetarian > omnivore | 1.53166 | 0.00755 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6819_32 | vegetarian > vegan | 1.26479 | 0.03045 |