Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865738_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_8 | 7573 | 9972 | + | GT51 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_9 | 10193 | 12097 | + | 2.A.108.2.10 |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_10 | 12126 | 12647 | + | 2.A.108.2.10 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_11 | 12763 | 14157 | + | YHS | FtrD-like |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_12 | 14157 | 15497 | + | 3.A.1.122.8 |
| pfam | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_13 | 15484 | 16617 | + | FtsX | MacB_PCD |
| TC | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081 | GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_14 | 16619 | 17290 | + | 3.A.1.122.8 |
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_8
Type: CAZyme
Location: 7573 - 9972 (+)
Type: CAZyme
Location: 7573 - 9972 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_9
Type: TC
Location: 10193 - 12097 (+)
Type: TC
Location: 10193 - 12097 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_10
Type: TC
Location: 12126 - 12647 (+)
Type: TC
Location: 12126 - 12647 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_11
Type: pfam
Location: 12763 - 14157 (+)
Type: pfam
Location: 12763 - 14157 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_12
Type: TC
Location: 14157 - 15497 (+)
Type: TC
Location: 14157 - 15497 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_13
Type: pfam
Location: 15484 - 16617 (+)
Type: pfam
Location: 15484 - 16617 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_14
Type: TC
Location: 16619 - 17290 (+)
Type: TC
Location: 16619 - 17290 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_9 | vegetarian > vegan | 1.03652 | 0.03045 |
| GasparriniAJ_2019_SRR9865738_bin.1_k141_6081_11 | vegetarian > vegan | 1.47116 | 0.02132 |