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Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_5364 GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_3 1988 2245 + 8.A.8.1.1
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_5364 GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_4 2325 4052 + 8.A.7.1.1
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_5364 GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_5 4112 4612 + 4.A.1.1.1
pfam GasparriniAJ_2019_SRR9865738_bin.1_k141_5364 GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_6 4686 5885 + PMI_typeI_cat | MPI_cupin_dom
CAZyme GasparriniAJ_2019_SRR9865738_bin.1_k141_5364 GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_7 6007 9033 + GH2
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_3
Type: TC
Location: 1988 - 2245 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_4
Type: TC
Location: 2325 - 4052 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_5
Type: TC
Location: 4112 - 4612 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_6
Type: pfam
Location: 4686 - 5885 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_7
Type: CAZyme
Location: 6007 - 9033 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_3 vegetarian > omnivore 1.08738 0.00755
GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_5 vegan > omnivore 2.80930 0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_5364_5 vegetarian > omnivore 1.54348 0.00755

🧭 Explore Read Mapping of CGC

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