dbCAN Logo

Cluster: GasparriniAJ_2019_SRR9865738_bin.1_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_432 GasparriniAJ_2019_SRR9865738_bin.1_k141_432_6 4184 4489 + 9.B.21.2.1
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_432 GasparriniAJ_2019_SRR9865738_bin.1_k141_432_7 4489 6354 + 2.A.16.2.2
pfam GasparriniAJ_2019_SRR9865738_bin.1_k141_432 GasparriniAJ_2019_SRR9865738_bin.1_k141_432_8 6397 7938 - PFL-like | YjjI-like
TC GasparriniAJ_2019_SRR9865738_bin.1_k141_432 GasparriniAJ_2019_SRR9865738_bin.1_k141_432_9 8129 8794 + 2.A.115.2.7
CAZyme GasparriniAJ_2019_SRR9865738_bin.1_k141_432 GasparriniAJ_2019_SRR9865738_bin.1_k141_432_10 8744 9772 - GT9
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_432_6
Type: TC
Location: 4184 - 4489 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_432_7
Type: TC
Location: 4489 - 6354 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_432_8
Type: pfam
Location: 6397 - 7938 (-)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_432_9
Type: TC
Location: 8129 - 8794 (+)
Gene ID: GasparriniAJ_2019_SRR9865738_bin.1_k141_432_10
Type: CAZyme
Location: 8744 - 9772 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
GasparriniAJ_2019_SRR9865738_bin.1_k141_432_9 vegan > omnivore 1.39952 0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_432_9 vegetarian > omnivore 1.35590 0.00755
GasparriniAJ_2019_SRR9865738_bin.1_k141_432_10 vegan > omnivore 1.53245 0.01144
GasparriniAJ_2019_SRR9865738_bin.1_k141_432_10 vegetarian > omnivore 1.13524 0.00755

🧭 Explore Read Mapping of CGC

← Back to Cluster List