Cluster: GasparriniAJ_2019_SRR9865562_bin.4_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865562_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_1 | 772 | 1215 | + | 4.A.6.1.16 |
| pfam | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_2 | 1215 | 1496 | + | YajC |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_3 | 1533 | 2015 | + | 4.A.6.1.4 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_4 | 2106 | 2906 | + | 4.A.6.1.4 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_5 | 2896 | 3978 | + | 4.A.6.1.4 |
| TF | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_6 | 4164 | 4895 | + | GntR |
| STP | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_7 | 5010 | 6176 | + | SIS | SIS |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032 | GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_8 | 6294 | 7463 | + | CE9 |
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_1
Type: TC
Location: 772 - 1215 (+)
Type: TC
Location: 772 - 1215 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_2
Type: pfam
Location: 1215 - 1496 (+)
Type: pfam
Location: 1215 - 1496 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_3
Type: TC
Location: 1533 - 2015 (+)
Type: TC
Location: 1533 - 2015 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_4
Type: TC
Location: 2106 - 2906 (+)
Type: TC
Location: 2106 - 2906 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_5
Type: TC
Location: 2896 - 3978 (+)
Type: TC
Location: 2896 - 3978 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_6
Type: TF
Location: 4164 - 4895 (+)
Type: TF
Location: 4164 - 4895 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_7
Type: STP
Location: 5010 - 6176 (+)
Type: STP
Location: 5010 - 6176 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_20032_8
Type: CAZyme
Location: 6294 - 7463 (+)
Type: CAZyme
Location: 6294 - 7463 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.