Cluster: GasparriniAJ_2019_SRR9865562_bin.4_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865562_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_3 | 2618 | 4039 | - | GH1 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_4 | 4115 | 5896 | - | 4.A.3.1.1 |
| TF | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_5 | 6172 | 7182 | + | LacI |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_6 | 7515 | 9275 | - | 4.A.3.1.1 |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_7 | 9451 | 10893 | - | GH1 |
| TF | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_8 | 11235 | 12272 | + | LacI |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_9 | 12549 | 13988 | - | GH1 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_10 | 14055 | 15821 | - | 4.A.3.1.1 |
| TF | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_11 | 16179 | 17183 | + | LacI |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304 | GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_12 | 17398 | 17736 | + | 4.A.3.1.2 |
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_3
Type: CAZyme
Location: 2618 - 4039 (-)
Type: CAZyme
Location: 2618 - 4039 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_4
Type: TC
Location: 4115 - 5896 (-)
Type: TC
Location: 4115 - 5896 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_5
Type: TF
Location: 6172 - 7182 (+)
Type: TF
Location: 6172 - 7182 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_6
Type: TC
Location: 7515 - 9275 (-)
Type: TC
Location: 7515 - 9275 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_7
Type: CAZyme
Location: 9451 - 10893 (-)
Type: CAZyme
Location: 9451 - 10893 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_8
Type: TF
Location: 11235 - 12272 (+)
Type: TF
Location: 11235 - 12272 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_9
Type: CAZyme
Location: 12549 - 13988 (-)
Type: CAZyme
Location: 12549 - 13988 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_10
Type: TC
Location: 14055 - 15821 (-)
Type: TC
Location: 14055 - 15821 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_11
Type: TF
Location: 16179 - 17183 (+)
Type: TF
Location: 16179 - 17183 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_12
Type: TC
Location: 17398 - 17736 (+)
Type: TC
Location: 17398 - 17736 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865562_bin.4_k141_30304_8 | vegetarian > omnivore | 1.01194 | 0.03761 |