Cluster: GasparriniAJ_2019_SRR9865562_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865562_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_11 | 14930 | 17383 | - | 4.A.1.1.8 |
| NULL(UNKNOWN) | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_12 | 17405 | 17524 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_13 | 17608 | 18327 | + | GntR |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_14 | 18634 | 19950 | + | 3.A.1.1.45 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_15 | 20038 | 20892 | + | 3.A.1.1.45 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_16 | 20892 | 21731 | + | 3.A.1.1.45 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_17 | 21800 | 22999 | + | 3.A.1.1.22 |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_18 | 23295 | 25562 | - | GT35 |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366 | GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_19 | 25691 | 27196 | - | GH77 |
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_11
Type: TC
Location: 14930 - 17383 (-)
Type: TC
Location: 14930 - 17383 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_12
Type:
Location: 17405 - 17524 (+)
Type:
Location: 17405 - 17524 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_13
Type: TF
Location: 17608 - 18327 (+)
Type: TF
Location: 17608 - 18327 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_14
Type: TC
Location: 18634 - 19950 (+)
Type: TC
Location: 18634 - 19950 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_15
Type: TC
Location: 20038 - 20892 (+)
Type: TC
Location: 20038 - 20892 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_16
Type: TC
Location: 20892 - 21731 (+)
Type: TC
Location: 20892 - 21731 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_17
Type: TC
Location: 21800 - 22999 (+)
Type: TC
Location: 21800 - 22999 (+)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_18
Type: CAZyme
Location: 23295 - 25562 (-)
Type: CAZyme
Location: 23295 - 25562 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_23366_19
Type: CAZyme
Location: 25691 - 27196 (-)
Type: CAZyme
Location: 25691 - 27196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.