Cluster: GasparriniAJ_2019_SRR9865562_bin.4_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: GasparriniAJ_2019_SRR9865562_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_25 | 24342 | 25700 | - | 2.A.33.1.1 |
| pfam | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_26 | 25970 | 26893 | - | DHH | DHHA2 |
| pfam | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_27 | 27059 | 28012 | - | ROK |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_28 | 28253 | 28585 | - | 4.A.3.2.3 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_29 | 28595 | 28897 | - | 4.A.3.2.9 |
| TC | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_30 | 29059 | 30402 | - | 4.A.3.2.9 |
| CAZyme | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616 | GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_31 | 30523 | 31923 | - | GH1 |
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_25
Type: TC
Location: 24342 - 25700 (-)
Type: TC
Location: 24342 - 25700 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_26
Type: pfam
Location: 25970 - 26893 (-)
Type: pfam
Location: 25970 - 26893 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_27
Type: pfam
Location: 27059 - 28012 (-)
Type: pfam
Location: 27059 - 28012 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_28
Type: TC
Location: 28253 - 28585 (-)
Type: TC
Location: 28253 - 28585 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_29
Type: TC
Location: 28595 - 28897 (-)
Type: TC
Location: 28595 - 28897 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_30
Type: TC
Location: 29059 - 30402 (-)
Type: TC
Location: 29059 - 30402 (-)
Gene ID: GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_31
Type: CAZyme
Location: 30523 - 31923 (-)
Type: CAZyme
Location: 30523 - 31923 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| GasparriniAJ_2019_SRR9865562_bin.4_k141_22616_29 | vegan > omnivore | 1.05700 | 0.00701 |